Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa1267Putative orphan protein; No homology to any previously reported sequences. (129 aa)    
Predicted Functional Partners:
PSHAa1013
Homologs of previously reported genes of unknown function.
  
     0.584
PSHAa1268
Putative Oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.546
PSHAa1269
Putative fatty acid desaturase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.546
PSHAa2459
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
     0.540
PSHAa1996
Homologs of previously reported genes of unknown function; enzyme.
  
     0.488
PSHAa1579
Homologs of previously reported genes of unknown function.
  
     0.458
PSHAb0336
Homologs of previously reported genes of unknown function.
  
     0.438
ilvE
Putative branched-chain amino acid aminotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
     0.420
PSHAa1736
Homologs of previously reported genes of unknown function.
  
     0.400
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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