Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa1275Homologs of previously reported genes of unknown function. (269 aa)    
Predicted Functional Partners:
PSHAa2863
Putative polysaccharide deacetylase family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
     0.793
PSHAa1276
Homologs of previously reported genes of unknown function; membrane component.
       0.767
dgt
Putative deoxyguanosinetriphosphate triphosphohydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the dGTPase family. Type 2 subfamily.
       0.574
mshJ
Putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshJ (pilus type IV); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; 11985966.
  
     0.481
PSHAa2887
Homologs of previously reported genes of unknown function.
  
     0.473
flgH
Flagellar biosynthesis; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
  
  
 0.468
PSHAa0505
Homologs of previously reported genes of unknown function.
  
     0.464
PSHAa0397
Putative orphan protein; No homology to any previously reported sequences.
  
     0.456
flgI
Flagellar P-ring protein precursor (Basal body P-ring protein); Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
  
  
 0.451
PSHAa0719
Homologs of previously reported genes of unknown function.
  
     0.439
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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