Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa1277Homologs of previously reported genes of unknown function; membrane component. (394 aa)    
Predicted Functional Partners:
CheB
Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase); Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
  
 0.935
PSHAa0134
Homologs of previously reported genes of unknown function.
  
 0.854
PSHAa1380
Homologs of previously reported genes of unknown function.
 
    0.814
PSHAa2736
Homologs of previously reported genes of unknown function.
 
 
 0.797
PSHAa2294
Putative orphan protein; No homology to any previously reported sequences; membrane component.
 
    0.793
PSHAa0436
Homologs of previously reported genes of unknown function.
  
    0.781
PSHAb0191
Homologs of previously reported genes of unknown function; membrane component.
  
   
 0.781
PSHAa1106
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
    0.778
PSHAa2203
Homologs of previously reported genes of unknown function.
    0.772
PSHAa1795
Homologs of previously reported genes of unknown function.
 
    0.744
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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