Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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Experiments
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[Homology]
Score
PSHAa1280Homologs of previously reported genes of unknown function; membrane component. (364 aa)    
Predicted Functional Partners:
PSHAa0336
Putative histone deacetylase family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
   
 0.704
PSHAa2226
Putative histone deacetylase family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
   
 0.704
phoQ
Sensory histidine kinase in two-component regulatory system with PhoP; Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
    0.697
dnaN
DNA polymerase III, beta-subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
  
 0.572
PSHAb0211
Homologs of previously reported genes of unknown function.
 
     0.544
PSHAa1281
Putative orphan protein; No homology to any previously reported sequences; membrane component.
       0.524
phoP
Response regulator in two-component regulatory system with PhoQ; Function of homologous gene experimentally demonstrated in an other organism; regulator.
       0.524
PSHAa1284
Homologs of previously reported genes of unknown function.
       0.524
hepA
RNA polymerase associated protein (ATP-dependent helicase HepA); Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
    
 0.502
PSHAb0003
Putative DNA helicase with SNF2 domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
    
 0.502
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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