STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1302Homologs of previously reported genes of unknown function; enzyme. (186 aa)    
Predicted Functional Partners:
PSHAa1301
Putative orphan protein; No homology to any previously reported sequences.
       0.512
gcvP
Glycine cleavage complex protein P, glycine decarboxylase, PLP-dependent; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
    0.477
PSHAa1300
Homologs of previously reported genes of unknown function.
       0.444
icd
Isocitrate dehydrogenase, specific for NADP+; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.444
PSHAa0834
Putative DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
     0.420
csgA
Putative secreted major subunit of curlin, may bind calcium; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; structural protein.
  
    0.419
PSHAa1840
Putative TonB-dependent receptor; Function of strongly homologous gene; receptor.
  
     0.409
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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