Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa1354Putative alpha-amylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glycosyl hydrolase 13 family. (592 aa)    
Predicted Functional Partners:
PSHAa1356
Putative sugar transporter; Function of homologous gene experimentally demonstrated in an other organism; membrane component.
 
  
 0.898
PSHAa1353
Homologs of previously reported genes of unknown function.
 
  
 0.805
PSHAa1352
Putative TonB-dependent receptor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
 
   
 0.751
PSHAa1355
Putative glycosidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
   
 0.655
PSHAa2848
Alpha-glucosidase; Function of strongly homologous gene; enzyme.
 
   
 0.633
PSHAa1357
Putative alpha-amylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
    
0.519
PSHAa1363
Putative transcriptional regulator, LacI family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
  
 0.511
gltB
Glutamate synthase, large subunit, GOGAT; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.489
PSHAa1365
Putative transcription regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
  
 0.407
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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