STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1355Putative glycosidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme. (626 aa)    
Predicted Functional Partners:
PSHAa1356
Putative sugar transporter; Function of homologous gene experimentally demonstrated in an other organism; membrane component.
 
  
 0.934
PSHAa2848
Alpha-glucosidase; Function of strongly homologous gene; enzyme.
   
 0.766
PSHAa1354
Putative alpha-amylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glycosyl hydrolase 13 family.
     0.649
PSHAa1352
Putative TonB-dependent receptor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
 
   
 0.591
PSHAa1353
Homologs of previously reported genes of unknown function.
 
  
 0.563
PSHAa1357
Putative alpha-amylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
    
0.542
gltB
Glutamate synthase, large subunit, GOGAT; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.422
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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