Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa1369Homologs of previously reported genes of unknown function. (428 aa)    
Predicted Functional Partners:
PSHAb0200
Putative secreted serine protease, subtilisin family, possibly excreted; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the peptidase S8 family.
   
 
 0.919
PSHAa0068
Putative serine secreted endoprotease, subtilase family; Function of strongly homologous gene; enzyme; Belongs to the peptidase S8 family.
   
 
 0.783
PSHAa2649
Serine protease precursor; Function of strongly homologous gene; enzyme.
   
 
 0.783
PSHAb0289
Putative two-component hybrid sensor and regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
  
 
 0.644
PSHAa0654
Homologs of previously reported genes of unknown function.
  
 
 0.619
PSHAa2767
Homologs of previously reported genes of unknown function.
  
 
 0.613
PSHAa2621
Putative Sensory box sensor histidine kinase/response regulator; Function of strongly homologous gene; receptor.
  
 
 0.600
PSHAa2399
Putative nudix hydrolase family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the Nudix hydrolase family.
 
   
 0.579
PSHAa1370
Conserved protein of unknown function in gamma-proteobacteria; Homologs of previously reported genes of unknown function.
       0.570
rsxA
Electron transport complex protein rnfA, inner membrane protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
  
    0.566
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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