Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1400Homologs of previously reported genes of unknown function. (605 aa)    
Predicted Functional Partners:
PSHAa1401
Putative enzyme with metallo-hydrolase/oxidoreductase domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.868
PSHAa1402
Putative transcriptional regulator, AsnC family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
       0.759
PSHAa2386
Dipeptidyl peptidase IV; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
     0.598
PSHAb0238
Homologs of previously reported genes of unknown function.
  
     0.536
PSHAa2367
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
     0.500
PSHAa1403
Sulfate permease family protein; Function of strongly homologous gene; transporter.
  
   0.499
PSHAb0239
Putative orphan protein; No homology to any previously reported sequences.
  
     0.494
PSHAb0297
Putative enzyme; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
 
   0.470
hutG
Formiminoglutamate hydrolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the arginase family.
  
     0.442
PSHAa0614
Homologs of previously reported genes of unknown function; enzyme.
 
     0.429
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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