Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa1404Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component. (356 aa)    
Predicted Functional Partners:
PSHAa1405
Putative response regulator in two-component regulatory system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
 0.988
algR
Putative alginate biosynthesis regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
 0.887
PSHAa0101
Putative sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
 
    
 0.842
PSHAa2919
Putative control sensor/kinase protein (ArcB, TorS, ChiS, LuxQ, BvgS family); Function of strongly homologous gene; receptor.
 
    
 0.718
PSHAa1403
Sulfate permease family protein; Function of strongly homologous gene; transporter.
       0.712
PSHAa2394
Putative two-component sensor histidine kinase and response regulator hybrid; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
 
  
 0.659
PSHAa0654
Homologs of previously reported genes of unknown function.
 
    
 0.497
barA
Sensor protein barA; Function of strongly homologous gene; regulator.
      
 0.485
PSHAa0052
Hypothetical tryptophan-rich sensor protein; Function of strongly homologous gene; receptor.
 
    
 0.434
PSHAb0275
Two-component system, sensor histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
 
    
 0.421
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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