Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1437Homologs of previously reported genes of unknown function. (424 aa)    
Predicted Functional Partners:
PSHAa1438
Homologs of previously reported genes of unknown function.
  
 0.996
PSHAa1951
Homologs of previously reported genes of unknown function.
  
  
 0.859
PSHAb0460
Homologs of previously reported genes of unknown function; membrane component.
  
  
 0.597
PSHAa1655
Putative SufE protein; Function of homologous gene experimentally demonstrated in an other organism.
  
  
 0.510
PSHAa0055
Putative pyridoxal phosphate dependent enzyme; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
  
 0.477
csd
Putative cysteine desulfurase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
  
 0.477
csdA
Putative Cysteine sulfinate desulfinase (CSD); Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
  
 0.477
PSHAa2683
Homologs of previously reported genes of unknown function.
 
  
 0.454
PSHAa1563
Putative orphan protein; No homology to any previously reported sequences; membrane component.
 
     0.422
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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