STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1453Putative Transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator. (144 aa)    
Predicted Functional Partners:
hmgcL
Hydroxymethylglutaryl-CoA lyase (HMG-CoA lyase) (HL) (3-hydroxy-3-methylglutarate-CoA lyase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.884
PSHAa1452
Isovaleryl-CoA dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
    0.866
PSHAa1451
Beta subunit of a coenzyme A carboxylases family protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.855
PSHAa1449
Urea carboxylase (alpha subunit); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.848
PSHAa0654
Homologs of previously reported genes of unknown function.
   
 
 0.793
PSHAa2621
Putative Sensory box sensor histidine kinase/response regulator; Function of strongly homologous gene; receptor.
   
 
 0.790
PSHAa1447
succinyl-CoA transferase, subunit A; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.766
atoA
succinyl-CoA transferase, beta subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.760
atoB
acetyl-CoA acetyltransferase with thiolase domain; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the thiolase-like superfamily. Thiolase family.
  
    0.729
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.673
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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