Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1476Homologs of previously reported genes of unknown function. (252 aa)    
Predicted Functional Partners:
PSHAa1477
Probable nitrite reductase (EC 1.7.99.3); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the multicopper oxidase family.
 
     0.953
PSHAa1475
Homologs of previously reported genes of unknown function.
 
   
 0.929
PSHAa1482
Putative orphan protein; No homology to any previously reported sequences.
 
   
 0.718
nor
Nitric oxide reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.577
PSHAa1478
Putative orphan protein; No homology to any previously reported sequences.
       0.444
PSHAa2827
Putative ABC transporter, ATP-binding protein; Function of strongly homologous gene; enzyme.
  
    0.408
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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