Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa1496Homologs of previously reported genes of unknown function; membrane component. (430 aa)    
Predicted Functional Partners:
PSHAa1497
Putative Transglutaminase family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
     
 0.838
PSHAa1499
Homologs of previously reported genes of unknown function; membrane component.
       0.832
moxR
MoxR protein; Function of strongly homologous gene.
       0.832
PSHAa1501
Putative response regulator receiver in two-component signal transduction system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
       0.823
rnt
RNase T, degrades tRNA, has exonuclease and ssDNAse activity; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis.
      0.677
PSHAa1126
Homologs of previously reported genes of unknown function.
 
     0.660
gltS
Glutamate transport protein (GltS family); Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.
  
     0.509
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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