Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1541Homologs of previously reported genes of unknown function. (131 aa)    
Predicted Functional Partners:
PSHAa1540
Homologs of previously reported genes of unknown function.
       0.790
PSHAa1542
Homologs of previously reported genes of unknown function.
       0.695
PSHAa1537
Homologs of previously reported genes of unknown function.
       0.526
PSHAa1538
Putative orphan protein; No homology to any previously reported sequences.
       0.526
PSHAa1539
Putative orphan protein; No homology to any previously reported sequences.
       0.526
PSHAa1543
Putative orphan protein; No homology to any previously reported sequences.
       0.522
PSHAa1544
Putative phage-related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
       0.518
PSHAa1545
Putative orphan protein; No homology to any previously reported sequences.
       0.445
PSHAa1547
Putative orphan protein; No homology to any previously reported sequences.
       0.421
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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