STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1544Putative phage-related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy. (152 aa)    
Predicted Functional Partners:
PSHAa1540
Homologs of previously reported genes of unknown function.
 
    0.873
PSHAa1505
Putative phage protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
  
 0.823
PSHAa1551
Putative phage-related minor tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
    0.799
PSHAa1509
Homologs of previously reported genes of unknown function.
 
    0.794
PSHAa1543
Putative orphan protein; No homology to any previously reported sequences.
       0.785
PSHAa1523
Homologs of previously reported genes of unknown function.
 
     0.777
PSHAa1545
Putative orphan protein; No homology to any previously reported sequences.
       0.747
PSHAa1508
Homologs of previously reported genes of unknown function.
 
    0.740
PSHAa1510
Homologs of previously reported genes of unknown function.
 
     0.730
PSHAa1522
Homologs of previously reported genes of unknown function.
  
     0.697
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.