STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1552Putative orphan protein; No homology to any previously reported sequences; membrane component. (297 aa)    
Predicted Functional Partners:
PSHAa1550
Putative orphan protein; No homology to any previously reported sequences.
       0.618
PSHAa1551
Putative phage-related minor tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
       0.618
PSHAa1545
Putative orphan protein; No homology to any previously reported sequences.
       0.569
PSHAa1546
Putative orphan protein; No homology to any previously reported sequences.
       0.569
PSHAa1547
Putative orphan protein; No homology to any previously reported sequences.
       0.569
PSHAa1548
Putative orphan protein; No homology to any previously reported sequences.
       0.569
PSHAa1549
Putative orphan protein; No homology to any previously reported sequences.
       0.569
PSHAa1553
Homologs of previously reported genes of unknown function.
       0.561
PSHAa1554
Homologs of previously reported genes of unknown function.
       0.561
PSHAa1555
Homologs of previously reported genes of unknown function.
       0.561
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.