Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1553Homologs of previously reported genes of unknown function. (201 aa)    
Predicted Functional Partners:
PSHAa1554
Homologs of previously reported genes of unknown function.
       0.802
PSHAa1555
Homologs of previously reported genes of unknown function.
       0.802
PSHAa1556
Putative orphan protein; No homology to any previously reported sequences.
       0.781
PSHAa1557
Homologs of previously reported genes of unknown function.
       0.670
PSHAa1558
Putative orphan protein; No homology to any previously reported sequences.
       0.668
PSHAa1552
Putative orphan protein; No homology to any previously reported sequences; membrane component.
       0.561
PSHAa1551
Putative phage-related minor tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
       0.499
PSHAa1547
Putative orphan protein; No homology to any previously reported sequences.
       0.457
PSHAa1550
Putative orphan protein; No homology to any previously reported sequences.
       0.457
PSHAa1545
Putative orphan protein; No homology to any previously reported sequences.
       0.425
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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