Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1556Putative orphan protein; No homology to any previously reported sequences. (2410 aa)    
Predicted Functional Partners:
PSHAa1555
Homologs of previously reported genes of unknown function.
       0.782
PSHAa1553
Homologs of previously reported genes of unknown function.
       0.781
PSHAa1551
Putative phage-related minor tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
     0.780
PSHAa1554
Homologs of previously reported genes of unknown function.
       0.773
PSHAa1557
Homologs of previously reported genes of unknown function.
       0.668
PSHAa1558
Putative orphan protein; No homology to any previously reported sequences.
       0.668
PSHAa1296
Conserved protein of unknown function; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.602
PSHAa1552
Putative orphan protein; No homology to any previously reported sequences; membrane component.
       0.561
PSHAa1544
Putative phage-related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
    0.473
PSHAa1550
Putative orphan protein; No homology to any previously reported sequences.
       0.457
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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