Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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Experiments
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[Homology]
Score
PSHAa1559Homologs of previously reported genes of unknown function. (120 aa)    
Predicted Functional Partners:
osmY
Putative hyperosmotically inducible periplasmic protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
   
    0.706
PSHAa1214
Conserved protein of unknown function, nucleotide triphosphate hydrolase domain; Homologs of previously reported genes of unknown function.
   
    0.696
PSHAa1132
Trp repressor binding protein WrbA; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the WrbA family.
   
    0.659
PSHAa0024
Homologs of previously reported genes of unknown function.
   
    0.562
PSHAa1120
Homologs of previously reported genes of unknown function.
   
    0.546
dps
Stress response DNA-binding protein Dps; Function of homologous gene experimentally demonstrated in an other organism; phenotype; Belongs to the Dps family.
   
    0.530
dpsB
DNA-binding DPS protein; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the Dps family.
   
    0.530
PSHAa0299
Homologs of previously reported genes of unknown function.
   
    0.527
rpsJ
30S ribosomal subunit protein S10 (NusE protein); Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
    0.499
PSHAa1560
Homologs of previously reported genes of unknown function.
       0.466
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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