Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
uhpATwo-component system, NarL family, uhpT operon response regulator UhpA; Function of homologous gene experimentally demonstrated in an other organism; regulator. (209 aa)    
Predicted Functional Partners:
uhpB
Sensory histidine kinase in two-component regulatory system with UhpA, regulates uhpT expression; Function of homologous gene experimentally demonstrated in an other organism; receptor.
 
 
 0.999
barA
Sensor protein barA; Function of strongly homologous gene; regulator.
  
 
 0.951
csgD
Putative csg operon transcription regulator (LuxR family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
  
   
 0.937
PSHAb0289
Putative two-component hybrid sensor and regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
  
 
 0.891
PSHAa0654
Homologs of previously reported genes of unknown function.
  
 
 0.781
PSHAa2918
Putative transcriptional regulator, LuxR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
  
     0.745
PSHAa0077
Putative sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
   
 
 0.711
arcB
Aerobic respiration control sensor protein arcB; Function of strongly homologous gene; regulator.
   
 
 0.667
PSHAa1151
Putative two-component member protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
 
 0.643
PSHAa2919
Putative control sensor/kinase protein (ArcB, TorS, ChiS, LuxQ, BvgS family); Function of strongly homologous gene; receptor.
   
 
 0.641
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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