Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
uhpBSensory histidine kinase in two-component regulatory system with UhpA, regulates uhpT expression; Function of homologous gene experimentally demonstrated in an other organism; receptor. (533 aa)    
Predicted Functional Partners:
uhpA
Two-component system, NarL family, uhpT operon response regulator UhpA; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 
 0.999
uvrY
Putative regulator in two-component regulatory system with BarA (LuxR/UhpA familiy); Function of strongly homologous gene; regulator.
 
 
 
 0.873
PSHAa2948
LuxR family; Function of strongly homologous gene; regulator.
 
 
   0.777
PSHAa0699
Putative regulator in two-component regulatory system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
 
   0.774
csgD
Putative csg operon transcription regulator (LuxR family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
 
   0.704
PSHAa2918
Putative transcriptional regulator, LuxR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
 
   0.669
barA
Sensor protein barA; Function of strongly homologous gene; regulator.
      
 0.456
PSHAa2120
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
 
   0.413
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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