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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1603Putative orphan protein; No homology to any previously reported sequences. (120 aa)    
Predicted Functional Partners:
PSHAa1602
Putative orphan protein; No homology to any previously reported sequences.
      0.941
PSHAa1604
Putative orphan protein; No homology to any previously reported sequences.
       0.620
PSHAa1079
Putative orphan protein; No homology to any previously reported sequences.
  
     0.476
PSHAb0232
Putative TonB dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
     0.455
PSHAa2767
Homologs of previously reported genes of unknown function.
  
  
 0.449
htpX
Zinc metalloprotease HtpX, membrane-bound with cytosolic active site; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the peptidase M48B family.
       0.441
PSHAb0309
Putative enzyme of unknown function; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
    0.414
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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