STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1612Putative ABC-type transport system, periplasmic component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter. (346 aa)    
Predicted Functional Partners:
PSHAa1613
Putative ABC-type transport system, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 
 0.998
PSHAa1614
Putative ABC-type transport system, ATPase component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter; Belongs to the ABC transporter superfamily.
 
 
 0.995
fbpB
Iron(III) ABC transporter, permease protein; Function of strongly homologous gene; transporter.
 
 0.959
fbpA
Iron(III) ABC transporter, periplasmic iron(III)-binding protein; Function of strongly homologous gene; transporter.
  
  
  0.933
fbpC
Iron(III) ABC transporter, ATP-binding protein; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily.
 
 
 0.908
PSHAa1611
Putative orphan protein; No homology to any previously reported sequences.
       0.785
algZ
Putative alginate biosynthesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
   
   0.686
PSHAa2972
Homologs of previously reported genes of unknown function.
   
    0.572
trxB
Thioredoxin reductase, FAD/NAD(P)-binding; Function of strongly homologous gene; enzyme.
   
  
 0.499
PSHAa2562
Putative ABC transporter, periplasmic substrate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
  
 0.491
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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