Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1627Homologs of previously reported genes of unknown function. (270 aa)    
Predicted Functional Partners:
PSHAa1625
Putative ABC-type Na+ efflux pump, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 
     0.932
PSHAa1626
Sodium ABC exporter ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 
    0.894
PSHAa1628
Putative Glutamate carboxypeptidase II; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.762
PSHAa1088
Homologs of previously reported genes of unknown function.
  
     0.733
PSHAa1629
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
       0.677
PSHAa1338
Homologs of previously reported genes of unknown function; membrane component.
  
     0.612
PSHAa1895
Putative orphan protein; No homology to any previously reported sequences.
  
     0.537
PSHAa0548
Homologs of previously reported genes of unknown function.
  
     0.518
PSHAa1121
Homologs of previously reported genes of unknown function.
  
     0.507
PSHAa0530
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
     0.471
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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