Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa1674Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component. (699 aa)    
Predicted Functional Partners:
PSHAa1673
Homologs of previously reported genes of unknown function.
 
  
 0.994
PSHAa1672
Putative orphan protein; No homology to any previously reported sequences.
 
    0.960
PSHAa1671
Putative predicted exporter of the RND superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 
    0.939
PSHAa1675
Homologs of previously reported genes of unknown function.
       0.689
PSHAa0470
Homologs of previously reported genes of unknown function.
  
     0.687
pepN
Aminopeptidase N, a cysteinylglycinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.671
PSHAa1192
Putative TPR domain protein (tetratricopeptide repeat); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; 9482716, 1882418.
  
     0.634
PSHAa1949
Homologs of previously reported genes of unknown function.
  
    0.602
bamC
Putative lipoprotein-34 NlpB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.576
PSHAa1670
Putative glutamate dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
       0.575
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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