Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1686Homologs of previously reported genes of unknown function. (96 aa)    
Predicted Functional Partners:
PSHAa1685
Homologs of previously reported genes of unknown function; Belongs to the DsrF/TusC family.
  
 0.998
PSHAa1684
Homologs of previously reported genes of unknown function.
  
 
 0.986
PSHAa1687
Conserved protein of unknown function; Part of a sulfur-relay system.
  
 
 0.951
rluE
Ribosomal large subunit pseudouridine synthase E (Pseudouridylate synthase) (Uracil hydrolyase); Function of strongly homologous gene; enzyme; Belongs to the pseudouridine synthase RsuA family.
       0.782
PSHAa1683
Putative transport protein (TEGT family) (partial match); Function of strongly homologous gene; transporter; Belongs to the BI1 family.
       0.779
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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