Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa1687Conserved protein of unknown function; Part of a sulfur-relay system. (109 aa)    
Predicted Functional Partners:
PSHAa1684
Homologs of previously reported genes of unknown function.
 
 
 0.998
PSHAa1685
Homologs of previously reported genes of unknown function; Belongs to the DsrF/TusC family.
 
  
 0.981
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
   
 0.954
PSHAa1686
Homologs of previously reported genes of unknown function.
  
 
 0.951
PSHAa1683
Putative transport protein (TEGT family) (partial match); Function of strongly homologous gene; transporter; Belongs to the BI1 family.
    
 0.882
rluE
Ribosomal large subunit pseudouridine synthase E (Pseudouridylate synthase) (Uracil hydrolyase); Function of strongly homologous gene; enzyme; Belongs to the pseudouridine synthase RsuA family.
       0.782
yccW
Ribosomal RNA large subunit methyltransferase I; Specifically methylates the cytosine at position 1962 (m5C1962) of 23S rRNA.
      0.692
sirA
Small ubiquitous RNA-binding protein; Sulfur carrier protein which probably makes part of a sulfur- relay system; Belongs to the sulfur carrier protein TusA family.
  
   
 0.583
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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