Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PSHAa1702Homologs of previously reported genes of unknown function. (386 aa)    
Predicted Functional Partners:
PSHAa2399
Putative nudix hydrolase family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the Nudix hydrolase family.
 
     0.705
PSHAb0512
Putative Ton-B dependent protein (could be involved in iron transport); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
     0.672
PSHAa1818
Homologs of previously reported genes of unknown function; Belongs to the UPF0352 family.
  
     0.582
PSHAa0640
Homologs of previously reported genes of unknown function.
  
     0.568
PSHAa1719
Phosphatidylserine synthase; Function of strongly homologous gene; enzyme.
 
    0.568
PSHAa1369
Homologs of previously reported genes of unknown function.
 
   
 0.547
PSHAa2490
Homologs of previously reported genes of unknown function.
  
     0.536
PSHAa0108
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
     0.521
PSHAa0643
Homologs of previously reported genes of unknown function; enzyme.
 
   
 0.511
PSHAa2867
Homologs of previously reported genes of unknown function; membrane component.
  
     0.509
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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