Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PSHAa1733Homologs of previously reported genes of unknown function. (67 aa)    
Predicted Functional Partners:
PSHAa1732
Conserved protein of unknown function with protein kinase-like domain; Homologs of previously reported genes of unknown function; Belongs to the fructosamine kinase family.
       0.738
PSHAa1731
Homologs of previously reported genes of unknown function.
 
     0.645
PSHAa1872
Putative TolA protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
     0.639
PSHAa0506
Homologs of previously reported genes of unknown function.
  
     0.522
PSHAa0242
Putative general secretion pathway protein N; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
     0.496
PSHAa1702
Homologs of previously reported genes of unknown function.
  
     0.492
PSHAa1844
Putative Cbb3-type cytochrome oxidase, subunit 3; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
     0.473
PSHAa2312
Putative orphan protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.460
seqA
SeqA protein, recognizes hemimethylated GATC motifs; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated.
  
     0.449
PSHAa1567
Putative rhomboid family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
     0.443
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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