STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdtKMultidrug transport protein (MATE family); Function of strongly homologous gene; transporter. (451 aa)    
Predicted Functional Partners:
PSHAa1736
Homologs of previously reported genes of unknown function.
       0.890
ribC
Riboflavin synthase; Function of strongly homologous gene; enzyme.
  
    0.798
tolC
Outer membrane protein tolC precursor; Function of homologous gene experimentally demonstrated in an other organism; transporter.
   
  
 0.635
rpsA
30S ribosomal subunit protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.522
ampD
N-acetyl-anhydromuramyl-L-alanine amidase; Function of strongly homologous gene; enzyme.
      
 0.441
cvpA
Membrane protein required for colicin V production; Function of homologous gene experimentally demonstrated in an other organism; membrane component.
     
 0.437
PSHAa2345
DNA topoisomerase III (C-terminal part); Gene remnant; enzyme.
     
 0.423
topB
DNA topoisomerase III; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.423
corC
Magnesium and cobalt efflux protein corC; Function of strongly homologous gene; transporter.
      
 0.418
eptA
Lipid A phosphoethanolamine transferase, associated with polymyxin resistance; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
      
 0.418
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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