STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1740Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor. (1016 aa)    
Predicted Functional Partners:
PSHAa1749
Putative alginate lyase precursor (partial match); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.770
alyll
Putative chondroitin AC/alginate lyase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.762
PSHAa1746
Putative hexuronate transport protein (MFS family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
    0.744
PSHAa0571
Putative alginate lyase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.741
PSHAa1353
Homologs of previously reported genes of unknown function.
 
     0.691
PSHAa1739
Putative regulatory protein, GntR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
  
     0.682
PSHAb0526
Homologs of previously reported genes of unknown function.
 
     0.627
PSHAa1142
Homologs of previously reported genes of unknown function.
 
     0.601
PSHAb0527
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
    0.576
PSHAa1747
Putative pectin degradation protein (Sugar phosphate isomerase family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
     0.564
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.