STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alyllPutative chondroitin AC/alginate lyase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme. (738 aa)    
Predicted Functional Partners:
PSHAa1749
Putative alginate lyase precursor (partial match); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
  
  0.974
PSHAa1747
Putative pectin degradation protein (Sugar phosphate isomerase family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
   
 0.952
PSHAa1746
Putative hexuronate transport protein (MFS family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 
    0.950
PSHAa0571
Putative alginate lyase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
  
 0.889
PSHAa1739
Putative regulatory protein, GntR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
     0.770
PSHAa1740
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
     0.762
mreD
Rod shape-determining protein; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
      
 0.760
PSHAa1745
Putative ketodeoxygluconokinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
   
 0.711
PSHAa0160
Homologs of previously reported genes of unknown function.
  
     0.637
PSHAa1750
Putative tartronate semialdehyde reductase (TSAR); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
     0.608
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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