Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa1749Putative alginate lyase precursor (partial match); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme. (753 aa)    
Predicted Functional Partners:
alyll
Putative chondroitin AC/alginate lyase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
  
  0.974
PSHAa1746
Putative hexuronate transport protein (MFS family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
 
    0.951
PSHAa1747
Putative pectin degradation protein (Sugar phosphate isomerase family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
   
 0.949
PSHAa0571
Putative alginate lyase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
   
 0.784
PSHAa1739
Putative regulatory protein, GntR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
     0.774
PSHAa1740
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
     0.770
PSHAa1745
Putative ketodeoxygluconokinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
   
 0.708
PSHAa2457
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter.
  
     0.658
PSHAa1750
Putative tartronate semialdehyde reductase (TSAR); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
     0.598
PSHAa0160
Homologs of previously reported genes of unknown function.
  
     0.593
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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