STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galMGalactose-1-epimerase (mutarotase); Function of homologous gene experimentally demonstrated in an other organism; enzyme. (310 aa)    
Predicted Functional Partners:
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 0.997
galE
UDP-galactose 4-epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
 0.942
glk
Putative glucokinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the bacterial glucokinase family.
    
 0.909
galT
Galactose-1-phosphate uridylyltransferase; Function of strongly homologous gene; enzyme.
 
 0.885
PSHAa1768
Putative sodium/hexose cotransport protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; transporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.627
PSHAb0257
Putative oxidoreductase/dehydrogenase family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
  
 0.615
nagK
N-acylmannosamine kinase; Function of strongly homologous gene; enzyme.
 
   
 0.565
PSHAb0209
Putative carbohydrate kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
  
 0.507
PSHAa1771
Putative GalR repressor of contiguous operon, likely to bind a galactoside; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
   
 0.445
nagA
Putative N-acetylglucosamine-6-phosphate deacetylase; Function of strongly homologous gene; enzyme; Belongs to the metallo-dependent hydrolases superfamily. NagA family.
 
  
 0.411
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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