Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PSHAa1782Homologs of previously reported genes of unknown function. (405 aa)    
Predicted Functional Partners:
PSHAa1780
Putative Exopolysaccharide biosynthesis protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.959
PSHAa1781
Putative polysaccharide export-related protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
     0.939
PSHAa1779
Putative Capsular polysaccharide biosynthesis, capC; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
     0.909
wcaJ
UDP-glucose lipid carrier transferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
     0.892
PSHAa1797
Homologs of previously reported genes of unknown function.
 
     0.786
PSHAa1778
Homologs of previously reported genes of unknown function.
       0.754
PSHAa1320
Putative orphan protein; No homology to any previously reported sequences.
  
     0.435
PSHAa2569
Homologs of previously reported genes of unknown function; regulator.
  
     0.401
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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