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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa1790Homologs of previously reported genes of unknown function. (425 aa)    
Predicted Functional Partners:
wcaJ
UDP-glucose lipid carrier transferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.965
ugd
UDP-glucose 6-dehydrogenase; Function of strongly homologous gene; enzyme.
  
  
 0.917
PSHAa1780
Putative Exopolysaccharide biosynthesis protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.866
PSHAa1789
Putative glycosyl transferase, family 2; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
  
 0.735
PSHAa1786
Putative glycosyl transferase, WecB/TagA/CpsF family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme; Belongs to the glycosyltransferase 26 family.
  
  
 0.686
rffE
UDP-N-acetyl glucosamine-2-epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.678
PSHAa1797
Homologs of previously reported genes of unknown function.
 
  
 0.636
cpsB
Putative mannose-1-phosphate guanyltransferase, colanic acid synthesis; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.616
PSHAa1787
Homologs of previously reported genes of unknown function.
  
  
 0.613
PSHAa1791
Homologs of previously reported genes of unknown function.
  
  
 0.592
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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