STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilZType 4 fimbrial biogenesis protein PILZ; Function of strongly homologous gene. (108 aa)    
Predicted Functional Partners:
PSHAa1106
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
 
   0.965
PSHAa0456
Putative HAMP domain/GGDEF domain/EAL domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
    
   0.954
PSHAa1795
Homologs of previously reported genes of unknown function.
    
   0.954
PSHAa2294
Putative orphan protein; No homology to any previously reported sequences; membrane component.
    
   0.954
holB
Putative DNA polymerase III delta' subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
     
 0.904
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.888
mltG
Conserved protein of unknown function; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
       0.869
pabC
4-amino-4-deoxychorismate lyase; Function of strongly homologous gene; enzyme.
       0.869
pilM
Putative Type IV pilus biogenesis protein PilM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; structural protein.
  
   
 0.821
pilP
Putative Type IV pilus biogenesis protein PilP; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; structural protein.
  
   
 0.810
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.