STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1832Cryptic haloacid dehalogenase 1 (EC 3.8.1.2) (partial); Function of strongly homologous gene; enzyme. (228 aa)    
Predicted Functional Partners:
PSHAa1831
Homologs of previously reported genes of unknown function.
    0.929
PSHAb0186
Homologs of previously reported genes of unknown function.
 
     0.711
PSHAa1830
Putative transcriptional regulator with periplasmic binding protein domain (LysR family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator; Belongs to the LysR transcriptional regulatory family.
       0.699
alyll
Putative chondroitin AC/alginate lyase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.565
PSHAa1749
Putative alginate lyase precursor (partial match); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.437
PSHAa1833
Homologs of previously reported genes of unknown function.
       0.432
PSHAa0571
Putative alginate lyase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.412
PSHAb0185
Putative transcriptional regulator, TetR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
     0.412
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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