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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PSHAa1862Putative TonB-dependent receptor; Function of homologous gene experimentally demonstrated in an other organism; receptor. (789 aa)    
Predicted Functional Partners:
phoD
Putative alkaline phosphatase D (APaseD); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
 
     0.805
PSHAa1861
Putative orphan protein; No homology to any previously reported sequences.
 
     0.772
PSHAa1825
Putative transmembrane sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
 
 0.729
PSHAa1826
Putative sigma factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.668
PSHAa1352
Putative TonB-dependent receptor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
  
 0.628
PSHAa1465
Putative mini-circle transposase for IS117; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.608
PSHAa2180
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
  
 0.608
PSHAb0433
Homologs of previously reported genes of unknown function.
  
     0.556
PSHAa1840
Putative TonB-dependent receptor; Function of strongly homologous gene; receptor.
  
   
 0.555
PSHAb0057
Putative Zn-dependent aminopeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
  
     0.515
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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