STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1888Putative cyanophycinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (547 aa)    
Predicted Functional Partners:
hutG
Formiminoglutamate hydrolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the arginase family.
  
   
 0.514
PSHAa2367
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
  
     0.477
PSHAa2535
Homologs of previously reported genes of unknown function.
  
     0.474
PSHAa1344
Homologs of previously reported genes of unknown function.
  
     0.471
PSHAa1889
Putative orphan protein; No homology to any previously reported sequences.
       0.467
PSHAa0988
Homologs of previously reported genes of unknown function.
  
     0.443
PSHAa2430
Putative orphan protein; No homology to any previously reported sequences.
  
     0.442
PSHAa2249
Putative DNA binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
     0.429
seqA
SeqA protein, recognizes hemimethylated GATC motifs; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated.
  
     0.427
PSHAa0083
Homologs of previously reported genes of unknown function; membrane component.
  
     0.426
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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