Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PSHAa1895Putative orphan protein; No homology to any previously reported sequences. (893 aa)    
Predicted Functional Partners:
PSHAa1896
Homologs of previously reported genes of unknown function.
       0.868
PSHAa1897
Homologs of previously reported genes of unknown function.
       0.868
PSHAa0548
Homologs of previously reported genes of unknown function.
 
    0.655
dagA
Na(+)-linked D-alanine glycine permease; Function of homologous gene experimentally demonstrated in an other organism; transporter.
       0.615
PSHAa1894
Homologs of previously reported genes of unknown function.
       0.598
PSHAa1088
Homologs of previously reported genes of unknown function.
  
 
   0.548
PSHAa1627
Homologs of previously reported genes of unknown function.
  
     0.537
PSHAa2305
Putative orphan protein; No homology to any previously reported sequences.
  
     0.503
PSHAa1899
Homologs of previously reported genes of unknown function.
   
   0.486
PSHAa1674
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
     0.459
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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