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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
dagANa(+)-linked D-alanine glycine permease; Function of homologous gene experimentally demonstrated in an other organism; transporter. (555 aa)    
Predicted Functional Partners:
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
      0.901
PSHAa1899
Homologs of previously reported genes of unknown function.
       0.681
PSHAa1897
Homologs of previously reported genes of unknown function.
       0.621
PSHAa1896
Homologs of previously reported genes of unknown function.
       0.620
PSHAa1895
Putative orphan protein; No homology to any previously reported sequences.
       0.615
PSHAa2252
Putative Voltage-gated ClC-type chloride channel clcA; Function of homologous gene experimentally demonstrated in an other organism; transporter.
   
    0.453
PSHAa1894
Homologs of previously reported genes of unknown function.
       0.426
gapA
Glyceraldehyde 3-phosphate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
       0.401
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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