Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1906Homologs of previously reported genes of unknown function. (351 aa)    
Predicted Functional Partners:
hda
Putative regulatory factor involved in inactivation of DnaA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator; Belongs to the DnaA family. HdA subfamily.
       0.837
pheS
Phenylalanine tRNA synthetase, alpha-subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
       0.711
PSHAa2607
Homologs of previously reported genes of unknown function.
  
     0.699
PSHAa0817
Homologs of previously reported genes of unknown function.
  
     0.658
ihfA
Integration host factor (IHF), alpha subunit, DNA-bending protein, DNA replication; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
       0.655
pheT
Phenylalanine tRNA synthetase, beta-subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.655
PSHAa2312
Putative orphan protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.639
PSHAa1949
Homologs of previously reported genes of unknown function.
 
    0.628
PSHAa2522
Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
     0.555
PSHAb0449
Homologs of previously reported genes of unknown function.
  
     0.517
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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