STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1968Homologs of previously reported genes of unknown function. (357 aa)    
Predicted Functional Partners:
PSHAa1969
Putative flavoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
       0.561
truC
tRNA pseudouridine synthase C; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.561
PSHAa1971
Homologs of previously reported genes of unknown function.
       0.561
gabD-2
Succinate-semialdehyde dehydrogenase I, NADP-dependent; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the aldehyde dehydrogenase family.
       0.495
PSHAb0512
Putative Ton-B dependent protein (could be involved in iron transport); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
     0.450
PSHAa1861
Putative orphan protein; No homology to any previously reported sequences.
  
     0.406
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.