STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1971Homologs of previously reported genes of unknown function. (106 aa)    
Predicted Functional Partners:
truC
tRNA pseudouridine synthase C; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.917
PSHAa1969
Putative flavoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
       0.868
PSHAa1972
Homologs of previously reported genes of unknown function.
       0.738
PSHAa1973
Homologs of previously reported genes of unknown function.
       0.738
PSHAa2313
Putative GlpG protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
  
     0.630
PSHAa1968
Homologs of previously reported genes of unknown function.
       0.561
PSHAa2069
Putative orphan protein; No homology to any previously reported sequences.
  
     0.541
PSHAa2618
Homologs of previously reported genes of unknown function.
 
     0.529
ttk
Putative transcriptional regulator of dUTPase (TetR/AcrR family); Required for nucleoid occlusion (NO) phenomenon, which prevents Z-ring formation and cell division over the nucleoid. Acts as a DNA-associated cell division inhibitor that binds simultaneously chromosomal DNA and FtsZ, and disrupts the assembly of FtsZ polymers. SlmA-DNA-binding sequences (SBS) are dispersed on non-Ter regions of the chromosome, preventing FtsZ polymerization at these regions.
  
     0.500
rmf
Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family.
  
     0.467
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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