STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa1999Homologs of previously reported genes of unknown function. (423 aa)    
Predicted Functional Partners:
PSHAa2000
Homologs of previously reported genes of unknown function; membrane component.
       0.785
PSHAa2001
Putative Predicted transporter component; Function of strongly homologous gene; transporter.
       0.785
PSHAa1998
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; membrane component.
       0.773
PSHAa1997
Putative orphan protein; No homology to any previously reported sequences.
     
 0.652
PSHAa1996
Homologs of previously reported genes of unknown function; enzyme.
       0.505
PSHAa1685
Homologs of previously reported genes of unknown function; Belongs to the DsrF/TusC family.
  
     0.437
secE
Protein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family.
   
  
 0.432
cdd
Putative cytidine/deoxycytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis.
      
 0.418
flhG
Putative flagellar biosynthetic protein FlhG; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
      
 0.414
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.