STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2008Putative orphan protein; No homology to any previously reported sequences. (289 aa)    
Predicted Functional Partners:
PSHAa2009
Homologs of previously reported genes of unknown function.
       0.750
recJ
Single-stranded-DNA-specific exonuclease, 5'--> 3'-specific; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 
 0.732
PSHAa1192
Putative TPR domain protein (tetratricopeptide repeat); Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; 9482716, 1882418.
  
     0.609
PSHAa2007
Homologs of previously reported genes of unknown function.
       0.582
PSHAa0847
Putative orphan protein; No homology to any previously reported sequences.
  
     0.453
PSHAb0525
Putative unknown membrane associated protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
  
     0.447
TonB2
TonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
     0.436
PSHAa0125
Homologs of previously reported genes of unknown function.
  
     0.412
PSHAa0470
Homologs of previously reported genes of unknown function.
  
     0.409
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.