STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PSHAa2020Homologs of previously reported genes of unknown function. (54 aa)    
Predicted Functional Partners:
cydA
Cytochrome d terminal oxidase, polypeptide subunit I; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 0.997
cydB
Cytochrome d terminal oxidase, polypeptide subunit II; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 0.996
cydD
Cysteine transport (export) protein (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal)); Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
  
 0.846
cydC
Cysteine transport (export) protein (ABC superfamily, membrane (N-terminal), atp_bind (C-terminal)); Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
  
 0.844
sdhB
Succinate dehydrogenase, Fe-S protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
  0.500
sdhA
Succinate dehydrogenase flavoprotein subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
     
  0.500
sdhD
Putative succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with sdhC; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
     
  0.500
sdhC
Putative succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with sdhD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; enzyme.
     
  0.500
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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