STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pspBRegulatory gene for expression of the psp operon with PspC, phage shock protein; Function of homologous gene experimentally demonstrated in an other organism; regulator. (77 aa)    
Predicted Functional Partners:
pspC-2
Transcriptional activator of the psp operon with PspB, phage shock protein; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 
 0.999
pspA-2
Negative regulatory gene for the psp opreon, phage shock protein; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 
 0.994
pspA
Putative negative regulatory gene for the psp operon, phage shock protein A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
 
 
 0.972
PSHAa0077
Putative sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; receptor.
    
 
 0.970
arcB
Aerobic respiration control sensor protein arcB; Function of strongly homologous gene; regulator.
    
 
 0.970
PSHAa0654
Homologs of previously reported genes of unknown function.
    
 
 0.970
PSHAb0289
Putative two-component hybrid sensor and regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy; regulator.
    
 
 0.970
pspC
Putative phage shock protein C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
  
 
 0.940
PSHAa2046
Conserved protein of unknown function, with nucleotide triphosphate hydrolase domain; Homologs of previously reported genes of unknown function.
     
 0.827
PSHAa2045
Homologs of previously reported genes of unknown function.
     
 0.826
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.